Package: BOP2FE 1.0.3

BOP2FE: Bayesian Optimal Phase II Design with Futility and Efficacy Stopping Boundaries
Bayesian optimal design with futility and efficacy stopping boundaries (BOP2-FE) is a novel statistical framework for single-arm Phase II clinical trials. It enables early termination for efficacy when interim data are promising, while explicitly controlling Type I and Type II error rates. The design supports a variety of endpoint structures, including single binary endpoints, nested endpoints, co-primary endpoints, and joint monitoring of efficacy and toxicity. The package provides tools for enumerating stopping boundaries prior to trial initiation and for conducting simulation studies to evaluate the design’s operating characteristics. Users can flexibly specify design parameters to suit their specific applications. For methodological details, refer to Xu et al. (2025) <doi:10.1080/10543406.2025.2558142>.
Authors:
BOP2FE_1.0.3.tar.gz
BOP2FE_1.0.3.zip(r-4.7)BOP2FE_1.0.3.zip(r-4.6)BOP2FE_1.0.3.zip(r-4.5)
BOP2FE_1.0.3.tgz(r-4.6-any)BOP2FE_1.0.3.tgz(r-4.5-any)
BOP2FE_1.0.3.tar.gz(r-4.7-any)BOP2FE_1.0.3.tar.gz(r-4.6-any)
BOP2FE_1.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
BOP2FE/json (API)
NEWS
| # Install 'BOP2FE' in R: |
| install.packages('BOP2FE', repos = c('https://belayb.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/belayb/bop2fe/issues
Last updated from:a208063b0e. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 139 | ||
| source / vignettes | OK | 147 | ||
| linux-release-x86_64 | NOTE | 133 | ||
| macos-release-arm64 | NOTE | 133 | ||
| macos-oldrel-arm64 | NOTE | 114 | ||
| windows-devel | NOTE | 117 | ||
| windows-release | NOTE | 113 | ||
| windows-oldrel | NOTE | 121 | ||
| wasm-release | OK | 99 |
Exports:BOP2FE_binaryBOP2FE_coprimaryBOP2FE_jointefftoxBOP2FE_nestedget_boundary_binaryget_boundary_coprimaryget_boundary_jointefftoxget_boundary_nestedget_boundary_oc_binaryget_boundary_oc_coprimaryget_boundary_oc_efftoxget_boundary_oc_nestedget_cf_cs_valuesget_oc_binaryget_oc_coprimaryget_oc_jointefftoxget_oc_nestedsearch_optimal_pars_binarysearch_optimal_pars_coprimarysearch_optimal_pars_efftoxsearch_optimal_pars_nestedsimulate_oc
Dependencies:clicpp11farverggplot2gluegridExtragtableisobandlabelinglifecyclepatchworkR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| BOP2-FE design for binary endpoint | BOP2FE_binary |
| BOP2-FE design for co-primary endpoint | BOP2FE_coprimary |
| BOP2-FE design for joint efficacy and toxicity endpoint | BOP2FE_jointefftox |
| BOP2-FE design for nested (ordinal) endpoint | BOP2FE_nested |
| Boundary values for binary Endpoint | get_boundary_binary |
| Boundary values for co-primary Endpoint | get_boundary_coprimary |
| Boundary values for joint Endpoint | get_boundary_jointefftox |
| Boundary values for Nested Endpoint | get_boundary_nested |
| Operating characteristics for binary Endpoint | get_oc_binary |
| Operating characteristics for for coprimary Endpoint | get_oc_coprimary |
| Operating characteristics for for joint Endpoint | get_oc_jointefftox |
| Operating characteristics for Nested Endpoint | get_oc_nested |
| Plot the cut-off probability and simulation results for BOP2FE designs | plot.bop2fe |
| Compute operating characteristics at the optimal boundary | simulate_oc |
| summarize main results for a given BOP2FE designs | summary.bop2fe |
